# DRAGEN Recipes

## Overview

The following sub-pages contain recommended command line options for specific DRAGEN pipelines. For an overview of DRAGEN command line parsing, also see [Multicaller Workflows](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-dna-pipeline/multi-caller)

### Germline Pipelines

* [DNA Germline WGS](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-germline-wgs)
* [DNA Germline WES](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-germline-wes)
* [DNA Germline Panel](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-germline-panel)
* [5 Base DNA Germline WGS](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-germline-wgs)
* [5 Base DNA Germline Panel](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-germline-panel)

### Germline with UMI Pipelines

* [DNA Germline WGS UMI](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-germline-wgs-umi)
* [DNA Germline WES UMI](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-germline-wes-umi)
* [DNA Germline Panel UMI](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-germline-panel-umi)
* [5 Base DNA Germline WGS UMI](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-germline-wgs-umi)
* [5 Base DNA Germline Panel UMI](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-germline-panel-umi)

### RNA and scRNA Pipelines

* [RNA WTS](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/rna-wts)
* [RNA Panel](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/rna-panel)
* [Illumina scRNA](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/illumina-scrna)
* [Other scRNA prep](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/other-scrna-prep)

### Somatic Pipelines

* [DNA Somatic Tumor-Normal Solid WGS](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-normal-solid-wgs)
* [DNA Somatic Tumor-Normal Solid WES](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-normal-solid-wes)
* [DNA Somatic Tumor-Normal Solid Panel](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-normal-solid-panel)
* [DNA Somatic Tumor-Only Solid WGS](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-only-solid-wgs)
* [DNA Somatic Tumor-Only Heme WGS](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-only-heme-wgs)
* [DNA Somatic Tumor-Only Solid WES](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-only-solid-wes)
* [DNA Somatic Tumor-Only Solid Panel](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-only-solid-panel)
* [5 Base DNA Somatic Tumor-Normal Solid WGS](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-somatic-tumor-normal-solid-wgs)
* [5 Base DNA Somatic Tumor-Normal Solid Panel](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-somatic-tumor-normal-solid-panel)
* [5 Base DNA Somatic Tumor-Only Solid WGS](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-somatic-tumor-only-solid-wgs)
* [5 Base DNA Somatic Tumor-Only Solid Panel](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-somatic-tumor-only-solid-panel)

### Somatic with UMI Pipelines

* [DNA Somatic Tumor-Normal Solid WGS UMI](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-normal-solid-wgs-umi)
* [DNA Somatic Tumor-Normal Solid WES UMI](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-normal-solid-wes-umi)
* [DNA Somatic Tumor-Normal Solid Panel UMI](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-normal-solid-panel-umi)
* [DNA Somatic Tumor-Only Solid WGS UMI](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-only-solid-wgs-umi)
* [DNA Somatic Tumor-Only Solid WES UMI](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-only-solid-wes-umi)
* [DNA Somatic Tumor-Only Solid Panel UMI](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-only-solid-panel-umi)
* [DNA Somatic Tumor-Only ctDNA Panel UMI](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-only-ctdna-panel-umi)
* [5 Base DNA Somatic Tumor-Only Solid WGS UMI](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-somatic-tumor-only-solid-wgs-umi)
* [5 Base DNA Somatic Tumor-Only Solid Panel UMI](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-somatic-tumor-only-solid-panel-umi)
* [5 Base DNA Somatic Tumor-Only ctDNA Panel UMI](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-somatic-tumor-only-ctdna-panel-umi)

### Amplicon Pipelines

* [DNA Amplicon](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-amplicon)
* [RNA Amplicon](https://help.dragen.illumina.com/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/rna-amplicon)