# DRAGEN Recipes

## Overview

The following sub-pages contain recommended command line options for specific DRAGEN pipelines. For an overview of DRAGEN command line parsing, also see [Multicaller Workflows](/dragen-v4.4/product-guide/dragen-v4.4/dragen-dna-pipeline/multi-caller.md)

### Germline Pipelines

* [DNA Germline WGS](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-germline-wgs.md)
* [DNA Germline WES](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-germline-wes.md)
* [DNA Germline Panel](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-germline-panel.md)
* [5 Base DNA Germline WGS](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-germline-wgs.md)
* [5 Base DNA Germline Panel](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-germline-panel.md)

### Germline with UMI Pipelines

* [DNA Germline WGS UMI](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-germline-wgs-umi.md)
* [DNA Germline WES UMI](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-germline-wes-umi.md)
* [DNA Germline Panel UMI](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-germline-panel-umi.md)
* [5 Base DNA Germline WGS UMI](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-germline-wgs-umi.md)
* [5 Base DNA Germline Panel UMI](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-germline-panel-umi.md)

### RNA and scRNA Pipelines

* [RNA WTS](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/rna-wts.md)
* [RNA Panel](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/rna-panel.md)
* [Illumina scRNA](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/illumina-scrna.md)
* [Other scRNA prep](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/other-scrna-prep.md)

### Somatic Pipelines

* [DNA Somatic Tumor-Normal Solid WGS](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-normal-solid-wgs.md)
* [DNA Somatic Tumor-Normal Solid WES](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-normal-solid-wes.md)
* [DNA Somatic Tumor-Normal Solid Panel](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-normal-solid-panel.md)
* [DNA Somatic Tumor-Only Solid WGS](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-only-solid-wgs.md)
* [DNA Somatic Tumor-Only Heme WGS](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-only-heme-wgs.md)
* [DNA Somatic Tumor-Only Solid WES](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-only-solid-wes.md)
* [DNA Somatic Tumor-Only Solid Panel](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-only-solid-panel.md)
* [5 Base DNA Somatic Tumor-Normal Solid WGS](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-somatic-tumor-normal-solid-wgs.md)
* [5 Base DNA Somatic Tumor-Normal Solid Panel](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-somatic-tumor-normal-solid-panel.md)
* [5 Base DNA Somatic Tumor-Only Solid WGS](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-somatic-tumor-only-solid-wgs.md)
* [5 Base DNA Somatic Tumor-Only Solid Panel](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-somatic-tumor-only-solid-panel.md)

### Somatic with UMI Pipelines

* [DNA Somatic Tumor-Normal Solid WGS UMI](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-normal-solid-wgs-umi.md)
* [DNA Somatic Tumor-Normal Solid WES UMI](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-normal-solid-wes-umi.md)
* [DNA Somatic Tumor-Normal Solid Panel UMI](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-normal-solid-panel-umi.md)
* [DNA Somatic Tumor-Only Solid WGS UMI](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-only-solid-wgs-umi.md)
* [DNA Somatic Tumor-Only Solid WES UMI](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-only-solid-wes-umi.md)
* [DNA Somatic Tumor-Only Solid Panel UMI](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-only-solid-panel-umi.md)
* [DNA Somatic Tumor-Only ctDNA Panel UMI](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-somatic-tumor-only-ctdna-panel-umi.md)
* [5 Base DNA Somatic Tumor-Only Solid WGS UMI](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-somatic-tumor-only-solid-wgs-umi.md)
* [5 Base DNA Somatic Tumor-Only Solid Panel UMI](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-somatic-tumor-only-solid-panel-umi.md)
* [5 Base DNA Somatic Tumor-Only ctDNA Panel UMI](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/5-base-dna-somatic-tumor-only-ctdna-panel-umi.md)

### Amplicon Pipelines

* [DNA Amplicon](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/dna-amplicon.md)
* [RNA Amplicon](/dragen-v4.4/product-guide/dragen-v4.4/dragen-recipes/rna-amplicon.md)


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