# DRAGEN Recipes ### Overview The following sub-pages contain recommended command line options for specific DRAGEN pipelines. For an overview of DRAGEN command line parsing, also see [Multicaller Workflows](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-dna-pipeline/multi-caller) #### Germline Pipelines * [DNA Germline Amplicon](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-germline-amplicon) * [DNA Germline Panel](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-germline-panel) * [DNA Germline WES](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-germline-wes) * [DNA Germline WGS](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-germline-wgs) * [5 Base DNA Germline Panel](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/5-base-dna-germline-panel) * [5 Base DNA Germline WGS](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/5-base-dna-germline-wgs) #### Germline with UMI Pipelines * [DNA Germline Panel UMI](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-germline-panel-umi) * [DNA Germline WES UMI](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-germline-wes-umi) * [5 Base DNA Germline Panel UMI](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/5-base-dna-germline-panel-umi) #### RNA and scRNA Pipelines * [Illumina scRNA](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/illumina-scrna) * [Illumina scRNA Perturb seq](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/illumina-scrna-perturb-seq) * [Other scRNA prep](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/other-scrna-prep) * [RNA Amplicon](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/rna-amplicon) * [RNA Panel](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/rna-panel) * [RNA WTS](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/rna-wts) #### Somatic Pipelines * [DNA Somatic Tumor-Normal Heme WGS](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-normal-heme-wgs) * [DNA Somatic Tumor-Normal MRD](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-normal-mrd) * [DNA Somatic Tumor-Normal Solid Panel](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-normal-solid-panel) * [DNA Somatic Tumor-Normal Solid WES](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-normal-solid-wes) * [DNA Somatic Tumor-Normal Solid WGS](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-normal-solid-wgs) * [DNA Somatic Tumor-Only Heme WGS](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-only-heme-wgs) * [DNA Somatic Tumor-Only Solid Amplicon](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-only-solid-amplicon) * [DNA Somatic Tumor-Only Solid Panel](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-only-solid-panel) * [DNA Somatic Tumor-Only Solid WES](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-only-solid-wes) * [DNA Somatic Tumor-Only Solid WGS](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-only-solid-wgs) * [DNA Somatic Tumor-Only ctDNA Amplicon](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-only-ctdna-amplicon) * [5 Base DNA Somatic Tumor-Normal Solid Panel](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/5-base-dna-somatic-tumor-normal-solid-panel) * [5 Base DNA Somatic Tumor-Normal Solid WGS](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/5-base-dna-somatic-tumor-normal-solid-wgs) * [5 Base DNA Somatic Tumor-Only Solid Panel](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/5-base-dna-somatic-tumor-only-solid-panel) * [5 Base DNA Somatic Tumor-Only Solid WGS](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/5-base-dna-somatic-tumor-only-solid-wgs) #### Somatic with UMI Pipelines * [DNA Somatic Tumor-Normal Solid Panel UMI](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-normal-solid-panel-umi) * [DNA Somatic Tumor-Normal Solid WES UMI](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-normal-solid-wes-umi) * [DNA Somatic Tumor-Normal Solid WGS UMI](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-normal-solid-wgs-umi) * [DNA Somatic Tumor-Only Solid Panel UMI](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-only-solid-panel-umi) * [DNA Somatic Tumor-Only Solid WES UMI](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-only-solid-wes-umi) * [DNA Somatic Tumor-Only Solid WGS UMI](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-only-solid-wgs-umi) * [DNA Somatic Tumor-Only ctDNA Panel UMI](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/dna-somatic-tumor-only-ctdna-panel-umi) * [5 Base DNA Somatic Tumor-Only Solid Panel UMI](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/5-base-dna-somatic-tumor-only-solid-panel-umi) * [5 Base DNA Somatic Tumor-Only ctDNA Panel UMI](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/5-base-dna-somatic-tumor-only-ctdna-panel-umi) #### TruPath Pipelines * [Illumina TruPath Genome WGS](https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes/illumina-trupath-genome-wgs) --- # Agent Instructions: Querying This Documentation If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question. Perform an HTTP GET request on the current page URL with the `ask` query parameter: ``` GET https://help.dragen.illumina.com/product-guides/dragen-v4.5/dragen-recipes.md?ask= ``` The question should be specific, self-contained, and written in natural language. The response will contain a direct answer to the question and relevant excerpts and sources from the documentation. Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.