DRAGEN Single Cell Pipeline

DRAGEN v4.5 provides support for the Illumina Single Cell 3' RNA Prep library based on PIPseq technology. DRAGEN scRNA Illumina Prep User Guide

DRAGEN also supports analysis of non-Illumina prep single cell samples. DRAGEN scRNA Other Prep User Guide

DRAGEN supports single cell ATAC-seq analysis as well. DRAGEN scATAC User Guide

Finally, DRAGEN supports dual analysis of matched scRNA and scATAC samples, referred to as "DRAGEN Single Cell Multiomics". DRAGEN Single Cell Multiomics User Guide

(Note that DRAGEN Single Cell Multiomics has not yet been tested with Illumina scRNA prep.)