Quick Start
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Local Dragen Server
4.4.4.62
run_Heme_WGS_TO_{version}.sh
/usr/local/bin
ICA
a11697ba-1144-4dc6-9e22-f21dff29f747
icav2
ICA Pipelines
ICA
urn:ilmn:ica:pipeline:a11697ba-1144-4dc6-9e22-f21dff29f747#Heme_WGS_TO_v4_4_4_62
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ICA UI
{version} is used to represent the software version number in Table 1 above. Similarly, <pipeline_run_script>
is used to indicate the client program name in this document.
The software may be and installed by following the . It may be executed using a local DRAGEN server or on a local computer which launches the analysis in the ICA cloud environment.
The command line program may be used to launch an analysis by using the <pipeline_run_script>
with the appropriate options.
start from bcl
start from one or more input folders when using FASTQ, BAM or CRAM files
Multiple folders may be specified as input folders in comma separated values when using FASTQ, BAM or CRAM files as input.
Pressing Ctrl+C during a DRAGEN step stops the currently running analysis and might cause an FPGA error. To recover from an FPGA error, shut down and restart the server.
Here is an example of starting an analysis using the ICA client by providing the necessary command parameters and specify a particuar storage size for analysis in ICA.
Coming soon.
Coming soon.
Coming soon.
See
See
See
The same analysis example above may be completed using the ICA UI by logging into the appropriate domain of your company and project where the Heme pipeline is .
Find more information in the .