Launching Analysis
UI Options
Manual Launch of Heme pipeline Analysis Software Analysis
To manually launch an analysis, configure a Heme pipeline Analysis Software pipeline analysis run in ICA with the following parameters.
General
User Reference
The custom name of the analysis for later identification.
Yes
Empty
User Tags
Tags for the analysis to help with categorization and identificaion, enhancing organization and searchability.
No
Empty
Notification
Add a user to be notified when the analysis completes.
No
No user selected
Output Folder
The path to the analysis output folder.
No
Project output folder
Input Files
Samplesheet
The SampleSheet.csv for the analysis
Yes
SampleSheet.csv in Input Folder
Input Directory
The input folder that contains [bcl, fastq, bam, cram] files to analyze. Multiple input [fastq, bam, cram] folders can be specified.
Yes
No folder selected
Custom Parameters Config File
The custom parameters config file for the analysis.
No
No file selected
Custom Resources Directory
The custom resoruces directory used for the analysis.
No
No folder selected
Settings
Input Type
The type of files in the Input Folder(s): bcl, fastq, bam, cram.
Yes
bcl
Reference Genome
The reference genome used for the analysis: [hs37d5_chr, hg38].
Yes
hg38
Enable Ora Compression
Compress fastq files using ora compression. [Only applies when Input Type is bcl].
No
true
Enable Post Processing
Use the post-processing scripts at the end of the pipeline analysis.
No
false
Sample IDs
Optional subset of Sample IDs or Pair IDs to analyze. A comma-separated list.
No
Empty
Resources
Storage Size
The storage size to allocate for the analysis. The minimum required value is Large.
Yes
Large
For information about using pipelines, refer to the Illumina Connected Analytics documentation.
Last updated
Was this helpful?