Templates

Sample Sheet templates for the pipeline for standalone DRAGEN server and ICA manual launch analysis can be found in the table below. For auto-launch compatible sample sheets, use BaseSpace Run Planner

The pipeline is compatible with several instruments and assay workflows (standard, XP), each of which have implications for the sample sheet.

Sample sheet templates contain all required fields, including index sequences in the proper orientation for all indexes from a given library prep kit. The templates are provided as a starting point for creating a sample sheet manually when launching analysis on a standalone DRAGEN server or on ICA using manual launch.

For interactive run planning or to create a sample sheet for ICA Autolaunch, use BaseSpace Run Planner to create valid sample sheets for either local or cloud analysis. To set up a run in BaseSpace run planner, refer to Sample Sheet Creation in BaseSpace Run Planner.

Users can visit the Sample Sheet guidelines section to learn additional details on required fields and values as they fill-in their sample information, or copy the text below into a new .csv file to use as a template when creating a sample sheet.

[Header],,,,,,,,,,
FileFormatVersion,2,,,,,,,,,
RunName,DRAGEN TN Start From FASTQ Only,,,,,,,,,
InstrumentType,NovaSeq,,,,,,,,,
InstrumentPlatform,NovaSeq,,,,,,,,,

[TN_Data],,,,,,,,,,
Sample_ID,Specimen_Type,Sample_Type,Case_ID,Sample_Description,Sample_Classification
tumorSample,FFPE,DNA,SampleA,Description1,Tumor
normalSample,FFPE,DNA,SampleA,Description2,Normal